Working with Mootools 1.3
Joomla 1.6.0 includes Mootools Core 1.3 and Mootools More 22.214.171.124 including all it's modules.
How to use Mootools
If your extension uses Mootools you can use the following code to include the framework in Joomla's output.
Mootools Core and Mootools More:
Differences to Mootools 1.1/1.2
Many old functions have been removed or renamed in Mootools 1.3. Thanks to the compatibility module they still work fine in Joomla 1.6, however a future version of Joomla is likely to remove the compatibility module. It is recommended to follow the Mootools' Upgrade from 1.2 to 1.3 guide to future proof your code.
You can find more information, examples and Mootools plug-ins on the Mootools Homepage.